I figured out the problem though. The fan in the old tower had a 3 pin case mount fan. The new one is a 4 pin which connects directly to the psu. So, the motherboard can't even find the system fan.
I heard you could disable the fan's temp reading in the bios but couldn't find anything about it...
Ghan has said he has fixed this. Monovertex please confirm this fix. This was only a problem with people that had signatures in the upper levels like not the special members but the respected members.