I think you mean the location of the Hero or Unit abilities on the bar on the bottom right corner.
In the very top of the abilities data (in the Object Editor), you will find something about position X and position Y (dont have the editor infront of me so I can't get the exact names, sorry)
X being the Horizontal Position (0-3) with 0 the left, and 3 the right
Y being the Vertical Position (0-2) with 0 the top, and 2 the bottom.
You need to re-order these to adjust the position to how you would like it to look. Eg first abilty spot is 0/2 (X=0;Y=2)
When to abilities have the same position, then the first in the list will gain the position.
If this is not what you meant, please clarify or give a screenshot.
Ghan has said he has fixed this. Monovertex please confirm this fix. This was only a problem with people that had signatures in the upper levels like not the special members but the respected members.